ChIP-chip interpretation

We have performed ChIP-chip analysis in both the following papers:

  • N. Song, T. Nguyen Duc, L. van Oeffelen, S. Muyldermans, E. Peeters and D. Charlier, ‘Expanded target and cofactor repertoire for the transcriptional activator LysM from Sulfolobus’, Nucleic Acids Research, vol. 41(5), Jan. 2013, pp. 2932-2949.
  • T. Nguyen Duc, L. van Oeffelen, N. Song, G. Hassanzadeh-Ghassabeh, S. Muyldermans, D. Charlier and E. Peeters, ‘The genome-wide binding profile of the Sulfolobus solfataricus transcription factor Ss-LrpB shows binding events beyond direct transcription regulation’, BMC Genomics, vol. 14: 828.

The software, written in R-bioconductor, can be found here for the experiments with LysM, and here for the experiments with Ss-LrpB. Questions and remarks can be mailed to the author, dr. ir. Liesbeth van Oeffelen. Back to top

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